<HTML><HEAD><TITLE>Motif 12</TITLE></HEAD>
<H2>Information for 12-TAAGCCCTGTTG (Motif 12)</H2>
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<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>p-value:</TD><TD>1e-4</TD></TR>
<TR><TD>log p-value:</TD><TD>-1.144e+01</TD></TR>
<TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
<TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
<TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
<TR><TD>Number of Background Sequences with motif</TD><TD>0.0</TD></TR>
<TR><TD>Percentage of Background Sequences with motif</TD><TD>0.00%</TD></TR>
<TR><TD>Average Position of motif in Targets</TD><TD>20.0 +/- 0.0bp</TD></TR>
<TR><TD>Average Position of motif in Background</TD><TD>0.0 +/- 0.0bp</TD></TR>
<TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
<TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
<TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif12.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif12RV.motif">reverse opposite</A></TD></TR>
<TR><TD>SVG Files for Logos:</TD><TD><A HREF="motif12.logo.svg">forward logo</A><BR/><A HREF="motif12RV.logo.svg">reverse opposite</A></TD></TR>
</TABLE>
<H3>Matches to Known Motifs</H3>
<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD>
<H4>Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>1</TD></TR>
<TR><TD>Score:</TD><TD>0.64</TD</TR>
<TR><TD>Offset:</TD><TD>0</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">TAAGCCCTGTTG</FONT><BR><FONT face="courier">TAATCCCN----</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>SCRT2/MA0744.2/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>2</TD></TR>
<TR><TD>Score:</TD><TD>0.63</TD</TR>
<TR><TD>Offset:</TD><TD>0</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">TAAGCCCTGTTG----</FONT><BR><FONT face="courier">NNNCACCTGTTGCTNN</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>SCRT1/MA0743.2/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>3</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>0</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">TAAGCCCTGTTG----</FONT><BR><FONT face="courier">NNCCACCTGTTGAANN</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>PH0125.1_Obox5_2/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>4</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>-6</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">------TAAGCCCTGTTG</FONT><BR><FONT face="courier">GATAATTAATCCCTCTT-</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>PROX1/MA0794.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>5</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>0</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">TAAGCCCTGTTG</FONT><BR><FONT face="courier">TAAGGCGTCTTG</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>PITX3/MA0714.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>6</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>-2</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">--TAAGCCCTGTTG</FONT><BR><FONT face="courier">CTTAATCCC-----</FONT></TD></TR></TABLE>
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</TD></TR>
<TR><TD>
<H4>Zic1::Zic2/MA1628.1/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>7</TD></TR>
<TR><TD>Score:</TD><TD>0.61</TD</TR>
<TR><TD>Offset:</TD><TD>3</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">TAAGCCCTGTTG--</FONT><BR><FONT face="courier">---NNCCTGCTGNG</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR>
<TR><TD>
<H4>SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>8</TD></TR>
<TR><TD>Score:</TD><TD>0.60</TD</TR>
<TR><TD>Offset:</TD><TD>3</TD</TR>
<TR><TD>Orientation:</TD><TD>reverse strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">TAAGCCCTGTTG-</FONT><BR><FONT face="courier">---CACCTGTTGC</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR></TABLE>
</TD></TR>
<TR><TD>
<H4>Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>9</TD></TR>
<TR><TD>Score:</TD><TD>0.59</TD</TR>
<TR><TD>Offset:</TD><TD>-2</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">--TAAGCCCTGTTG</FONT><BR><FONT face="courier">NYTAATCCYB----</FONT></TD></TR></TABLE>
</TD><TD>
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</TD></TR>
<TR><TD>
<H4>PITX1/MA0682.2/Jaspar</H4>
<TABLE><TR><TD>
<TABLE>
<TR><TD>Match Rank:</TD><TD>10</TD></TR>
<TR><TD>Score:</TD><TD>0.59</TD</TR>
<TR><TD>Offset:</TD><TD>-1</TD</TR>
<TR><TD>Orientation:</TD><TD>forward strand</TD></TR>
<TR><TD>Alignment:</TD><TD><FONT face="courier">-TAAGCCCTGTTG</FONT><BR><FONT face="courier">CTAATCCC-----</FONT></TD></TR></TABLE>
</TD><TD>
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